// DeNovoMAGICTM
The ultimate tool for whole genome assembly:
Maximize genome assembly potential with a service that brings together unparalleled quality in record time. DeNovoMAGIC has already been successfully used by hundreds of customers around the globe, ranging from large corporations to small-size companies and academia. NRGene’s team has successfully assembled over 400 genomes of various species. Encompassing varying levels of complexity and ploidy, NRGene has assembled some of the most challenging genomes, such as hexaploid wheat and the heterozygous octoploid strawberry.
Outstanding Results
| PARAMETERS | RYEGRASS | POTATO | SWEET POTATO | STRAWBERRY | APPLE | BOVINE |
|---|---|---|---|---|---|---|
| SCAFFOLD N50 (# OF SCAFFOLDS) | 3.05 Mbp (420) | 1.91 Mbp (252) | 2.15 Mbp (314) | 11.88 Mbp (33) | 4.98 Mbp (73) | 41.1 Mbp (20) |
| SCAFFOLD N90 (# OF SCAFFOLDS) | 0.28 Mbp (1,934) | 0.02 Mbp (6,285) | 0.20 Mbp (1,353) | 3.70 Mbp (113) | 0.06 Mbp (744) | 12.1 Mbp (62) |
| TOTAL ASSEMBLY SIZE | 4.53 Gbp | 2.33 Gbp | 2.37 Gbp | 1.37 Gbp | 1.26 Gbp | 2.55 Gbp |
| UNFILLED GAPS (=%N) | 1. 3% | 1.49% | 2.48% | 0.54% | 0.75% | 1.86% |
| COMPLETE BUSCO GENES | 97.85% | 96.46% | 94.51% | 94.77% | 97.01% | 93.4% |
Advantages
DeNovoMAGIC provides you with best-in-class genome assembly results
Low error rate – less than 1 in 3Mbp!*
DNA-to-Assembly in record delivery time
Proven technology – published in peerreviewed papers, and widely used by big corporations
A turn-key solution from DNA to DeNovo genome assembly regardless of complexity and ploidy
*Avni, R. et al. 2017. Wild emmer genome architecture and diversity elucidate wheat evolution and domestication. Science, 357(6346)
How it Works
An extensive yet simple tool for analyzing, storing and mining unlimited volumes of genomic data
DeNovoMAGIC delivers the most progressive and novel phasing ability. The only method to truly discover the entire content of the genome!
Related Videos
“Successful De-Novo Assembly of Maize Inbred Lines, Sequencing and Informatic Strategies”
Speaker: Dr. Alvaro Hernandez
Roy J. Carver Biotechnology Center,
University of Illinois
Building a Dolphin Genome Assembly
Frequently Asked Questions
For every diverged homolog or homeolog sequence (originating from heterozygosity or polyploidy respectively) there will be two different scaffolds in the delivered assembly, correctly capturing the actual genome sequence.
Results can be delivered in 4 months or less from sequence data availability
Yes, when provided with an existing physical or genetic map, we can order scaffolds to pseudo-molecules. If no such map is available, we can generate one for you. See our TraitMAGIC offer for more details on the creation of a genetic map.
